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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Sergio Godinez | 19th | Jason Kirby | 19th | 21st |
| First Basemen | Ben Rubenacker | 21st | Mark Cahill | 12th | 19th |
| Second Basemen | Antoine Roux | 4th | Luke Robbins | 19th | 4th |
| Third Basemen | Eric Chotkowski | 15th | Klaas Meij | 2nd | 15th |
| Shortstops | Tied for 25th | Billy Guzman | 17th | 29th | |
| Left Fielders | Nick Getz | 25th | Ichiro Toyota | 15th | 25th |
| Center Fielders | Tied for 26th | Danny Gallo | Tied for 12th | 28th | |
| Right Fielders | Nick Gentzel | 13th | Melvin Enriquez | 25th | 13th |
| Starting Pitchers | Nate Crow | 23rd | Keith Anter | 3rd | 23rd |
| Relievers | Brent Garland | 3rd | Pabiyan Vetlitsky | 20th | 3rd |
| Closers | Brent Garland | 13th | Nick Durham | 30th | 29th |
