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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Dan Lape | Tied for 11th | Neal Fleury | Tied for 1st | 3rd |
| First Basemen | Josh Ebeling | 3rd | Kevin Claus | 7th | 5th |
| Second Basemen | Joe Strachan | 2nd | Tied for 8th | 6th | |
| Third Basemen | Victor Victorino | 4th | 13th | 13th | |
| Shortstops | James Steinmetz | 6th | Tied for 8th | 9th | |
| Left Fielders | Pete Martin | 6th | Miguel Quizhpi | 6th | 5th |
| Center Fielders | Perry Brantley | 13th | Tied for 4th | 13th | |
| Right Fielders | Rob Hinojosa | 2nd | Tied for 7th | 4th | |
| Starting Pitchers | John Brown | 6th | Ryan Crawford | 4th | 4th |
| Relievers | David Cantu | 4th | Alex Almonte | Tied for 7th | 7th |
| Closers | Preki Nedic | 11th | Jason Marko | 5th | 11th |
